Details

The base point from which the geodesics emanate is shown by a small sphere that you can move on the torus by varying and (standard coordinates are used; and correspond to the outer and inner equators, respectively). Two sets of geodesics are shown and plotted for a length given by "radius." The Jacobi equation is solved along each geodesic until the conjugate point is reached. The component of the conjugate locus due to each set is shown as either a heavy red or blue curve.

As geodesics tend toward the inner equator, the conjugate points get further away and the resulting geodesic plotted on the torus can cloud the picture, so you can switch the geodesics on or off.

Reference

[1] M. L. Irons, "The Geodesics of the Torus," (Oct 5, 2016) www.rdrop.com/~half/math/torus/geodesics.xhtml.